Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_66001_67157_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

66001 - 67157

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

ACCTTCTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

TTTTTGTTACCT

Flanking Amino Acid:

MLTSIARVNSGKKRRRCNKR

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

70.8

0.47

71.2

32.8

Minor 5ss

-2.2

3.2

41.8

Minor BPS

60.3

0.4

2.3

86.99

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042455

59971 - 79050

19080

ENSAPLT00000035861

51759 - 78936

27178

ENSAPLT00000004009

51613 - 79050

27438

ENSAPLT00000046376

43241 - 79050

35810