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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6705617_6707674_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6705617 - 6707674
Intron Length:
2058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
GSKKRRRRRPEPQLKGIVTK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
60.9
45.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
33.7
-1.9
3
39.5
46.1
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010508
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010960
6705430 - 6760592
55163