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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6707786_6713744_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6707786 - 6713744
Intron Length:
5959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTTTCCATATGC
Flanking Amino Acid:
DGTKEEDSSYTLFNLIPVGL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80
0.68
0.7
73.4
31.6
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
48.9
-0.1
2.2
66.95
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010508
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010960
6705430 - 6760592
55163