About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6759175_6760455_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6759175 - 6760455
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTGTGCTGATGT
Flanking Amino Acid:
AAHFLPKPLKVAMYKEPSLH
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
42.5
-0.4
2.3
61.26
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010508
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010960
6705430 - 6760592
55163