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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6873_7477_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6873 - 7477
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCAAC
5'SS Class:
major
3'SS Sequence:
GAATCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATTAATT
Flanking Amino Acid:
LRLIHADINVMENTIKQSEN
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.7
38.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
71.4
0.48
1
67
43.2
Minor 5ss
45.9
-0.4
2.6
56.9
42.2
Minor BPS
64.9
0.55
1.8
83.51
36.9

Associated Gene:

Gene:
ZC4H2
Ensembl Gene ID:
ENSAPLG00000022359
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043003
2369 - 12812
10444