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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6889037_6962414_R

Intron Information:

Intron Rank:
141570
Intron Class:
major
Intron Phase:
Intron Coordinates:
6889037 - 6962414
Intron Length:
73378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTAAATATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
67
0.38
1
63.2
42.3
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
67.2
0.54
1.6
75.8
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023494
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028984
6888539 - 6963042
74504