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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_696102_696302_F

Intron Information:

Intron Rank:
149245
Intron Class:
major
Intron Phase:
Intron Coordinates:
696102 - 696302
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ACCCCTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.3
0.5
0.8
65.3
34.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
52
0.04
1.6
57.59
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028958
694365 - 696338
1974