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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6962699_6979846_R

Intron Information:

Intron Rank:
141572
Intron Class:
major
Intron Phase:
Intron Coordinates:
6962699 - 6979846
Intron Length:
17148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCTCG
5'SS Class:
major
3'SS Sequence:
TTCTGCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
55.9
43.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73
0.52
0.9
71.2
34.5
Minor 5ss
42.9
-0.8
3.1
52.9
46.3
Minor BPS
49.7
0.06
2
73.5
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023494
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045642
6962547 - 6980709
18163