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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7089685_7089801_R

Intron Information:

Intron Rank:
147967
Intron Class:
major
Intron Phase:
Intron Coordinates:
7089685 - 7089801
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TCCTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTGGCTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.1
36
Major BPS
84
0.85
0.9
75
39.9
Major PPT
73.5
0.53
0.8
67.7
32.4
Minor 5ss
44.4
-0.6
2.8
53.5
43.8
Minor BPS
56.8
0.2
1.4
61.39
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026909
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032473
7087218 - 7090618
3401