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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7097241_7104645_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7097241 - 7104645
Intron Length:
7405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTTCTCATTT
Flanking Amino Acid:
IMVLIFFLFTGTIGFFACFW
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.7
82.4
27.8
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
51.6
0.13
1.8
69.81
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637