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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7110022_7111531_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7110022 - 7111531
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTCAATGAATA
Flanking Amino Acid:
QIFIMTFITLFLACLGFLSP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.6
0.69
0.8
78.8
34.8
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
49.5
-0
1.9
68.61
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637