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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7118866_7121279_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7118866 - 7121279
Intron Length:
2414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAACG
Flanking Amino Acid:
RLVMARLRPQSYKHTDENNL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.3
0.73
0.7
82
29.2
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
75.9
0.67
1.5
80.33
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637