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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7121408_7123596_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7121408 - 7123596
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GATATTTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTTCTTAAGC
Flanking Amino Acid:
GRVKDACVINSEFNKKNTFY
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.5
0.6
0.9
73.9
41.2
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
67.4
0.52
1.6
73.09
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637