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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7123727_7123946_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7123727 - 7123946
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGTTCTTTGATA
Flanking Amino Acid:
KGMQLNYQHHWIIDNMPVTW
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.5
0.66
0.8
73.7
36
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
75
0.78
1.1
78.69
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637