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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7125861_7127159_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7125861 - 7127159
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTACTGTGATT
Flanking Amino Acid:
VESVLPYEYDAFDFCQDKEE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
71.6
40.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
37
-1.5
2.6
39.4
38.9
Minor BPS
49.3
0.03
2
70.86
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637