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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7127228_7127692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7127228 - 7127692
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTGTCATACTT
Flanking Amino Acid:
DDDKESEGCKSLIELFVNRL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.1
0.74
0.8
80.5
31.5
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
48.2
-0
1.9
70.34
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010658
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011201
7097173 - 7127809
30637