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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7138714_7139773_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7138714 - 7139773
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTACCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTGGCTTACCC
Flanking Amino Acid:
RGPPSRGSHLGSSRGPLPMK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
75.2
0.57
0.8
66.3
35.6
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
49.9
-0
2.2
66.71
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029262
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037551
7132134 - 7142343
10210