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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7139891_7140268_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7139891 - 7140268
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTCTAAAATT
Flanking Amino Acid:
PVRSSSMGGRAPVSRGRDSY
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72
0.5
1
75.7
33.2
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
51
0.11
1.9
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029262
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037551
7132134 - 7142343
10210