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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7140384_7140501_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7140384 - 7140501
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
ATGTAGTTAACA
Flanking Amino Acid:
PRDDGYSTKDGYSSRDYPSS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
85.1
0.79
0.7
81.4
30.6
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
55
0.15
2.2
70.74
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029262
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037551
7132134 - 7142343
10210