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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7178581_7182455_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7178581 - 7182455
Intron Length:
3875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGTG
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TGTTTCTCTATA
Flanking Amino Acid:
SKTQSWSAHSDSSKSPKTMK
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
67.4
44
Major BPS
57
0.17
0.9
65
30.8
Major PPT
82.3
0.73
0.7
77.3
31.5
Minor 5ss
40.4
-1.1
3.4
56.3
47.9
Minor BPS
52.3
0.07
1.8
67.72
38.5

Associated Gene:

Gene:
ARHGEF6
Ensembl Gene ID:
ENSAPLG00000011391
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039039
7149844 - 7185976
36133