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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7181640_7182455_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7181640 - 7182455
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TGTTTCTCTATA
Flanking Amino Acid:
AHSRMSYILKDSSKSPKTMK
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
57
0.17
0.9
65
30.8
Major PPT
82.3
0.73
0.7
77.3
31.5
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
52.3
0.07
1.8
67.72
38.5

Associated Gene:

Gene:
ARHGEF6
Ensembl Gene ID:
ENSAPLG00000011391
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011994
7149844 - 7185976
36133