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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7185439_7185835_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7185439 - 7185835
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
LKDEVKELKQENKRMKQCLE
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.7
0.6
0.8
71
34.1
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
ARHGEF6
Ensembl Gene ID:
ENSAPLG00000011391
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039039
7149844 - 7185976
36133
ENSAPLT00000011994
7149844 - 7185976
36133