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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7195194_7196057_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7195194 - 7196057
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTGA
5'SS Class:
major
3'SS Sequence:
GCTGTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TATGTTTCAAAT
Flanking Amino Acid:
LKGFKDLQGKDGAANKEGPK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
68.3
39.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.3
0.59
1
72.6
42.4
Minor 5ss
37.5
-1.4
3.2
49.4
46.8
Minor BPS
50.4
0.09
1.7
70.07
40.9

Associated Gene:

Gene:
CD40LG
Ensembl Gene ID:
ENSAPLG00000012271
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012796
7192874 - 7198328
5455