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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7220429_7221012_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7220429 - 7221012
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TCTTTTTAAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAAGT
Flanking Amino Acid:
HKSETVVLKNDSMSPHQWNF
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.2
44.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.7
0.58
0.9
74.8
33.8
Minor 5ss
32.3
-2
3
39.3
46
Minor BPS
61.8
0.45
1.7
74.22
43.6

Associated Gene:

Gene:
VGLL1
Ensembl Gene ID:
ENSAPLG00000012400
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012903
7217081 - 7224930
7850