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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7221243_7222038_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7221243 - 7222038
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAA
U12 Branch Point Sequence:
ACTTCTTGTACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
37
Major BPS
63.2
0.33
1.1
55.1
42.1
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
40.5
-1.1
2.9
54.3
42.8
Minor BPS
53.5
0.09
1.8
65.37
40.3

Associated Gene:

Gene:
VGLL1
Ensembl Gene ID:
ENSAPLG00000012400
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012903
7217081 - 7224930
7850