Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7231191_7231599_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7231191 - 7231599

Intron Length:

409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTCTTT

5'SS Class:

major

3'SS Sequence:

GTATCTTTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

GTATCTTTAATA

Flanking Amino Acid:

ETWDGVTDYQVEETAREREE

Intron Amino Acid Position:

562

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

71.6

40.9

Major BPS

74.5

0.61

79.6

29.1

Major PPT

70.1

0.45

66.3

39.4

Minor 5ss

48.5

-0.1

3.2

73.2

43.6

Minor BPS

76.3

0.82

1.1

76.92

33.9

Associated Gene:

Gene:

HTATSF1

Ensembl Gene ID:

ENSAPLG00000012401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012930

7230906 - 7251196

20291

ENSAPLT00000031105

7225562 - 7239943

14382