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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7236569_7236896_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7236569 - 7236896
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTGATGTAACT
Flanking Amino Acid:
QKSEKRKLEPGWFHVEEDRN
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.6
0.8
0.7
84.8
29.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
49.1
0.01
2.2
74.83
42.2

Associated Gene:

Gene:
HTATSF1
Ensembl Gene ID:
ENSAPLG00000012401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031105
7225562 - 7239943
14382
ENSAPLT00000012930
7230906 - 7251196
20291