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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7237102_7239754_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7237102 - 7239754
Intron Length:
2653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGCGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATT
Flanking Amino Acid:
DREKKAWFPKITEDFLATYH
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.1
44.3
44.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
23.7
-3
3.2
30.1
42.9
Minor BPS
74.3
0.84
1.2
86.64
33.8

Associated Gene:

Gene:
HTATSF1
Ensembl Gene ID:
ENSAPLG00000012401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031105
7225562 - 7239943
14382