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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7237102_7247743_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7237102 - 7247743
Intron Length:
10642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATT
Flanking Amino Acid:
AEEHGHARKQITEDFLATYH
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
74.3
0.84
1.2
86.64
33.8

Associated Gene:

Gene:
HTATSF1
Ensembl Gene ID:
ENSAPLG00000012401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012930
7230906 - 7251196
20291