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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7248096_7250765_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7248096 - 7250765
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTCTGACA
Flanking Amino Acid:
VFTLTVLSADRYRAIVKPLE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
73.2
0.52
0.9
70.2
41.3
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
60.9
0.34
1.7
76.09
34.6

Associated Gene:

Gene:
HTATSF1
Ensembl Gene ID:
ENSAPLG00000012401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012930
7230906 - 7251196
20291