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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_725603_725876_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
725603 - 725876
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAC
5'SS Class:
major
3'SS Sequence:
TGGTGGCACGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
GGCCGCCTAACG
Flanking Amino Acid:
LLSLLQVEIPGTVTSWVVIF
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.9
33.5
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
58.4
0.19
1.1
50.9
43
Minor 5ss
23.4
-3.1
3.4
31
43.4
Minor BPS
44
-0.6
2.1
47.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261