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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7266305_7267190_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7266305 - 7267190
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTA|GCAACAATG
5'SS Class:
weak_major
3'SS Sequence:
TTCAACCAGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTCATTCAACC
Flanking Amino Acid:
SFVLCHLYCFSLCITVAALL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.3
59.9
44.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
59.1
0.2
1.1
51.4
42.7
Minor 5ss
34.2
-1.8
4.1
50.7
41
Minor BPS
48.1
-0.1
1.7
56.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012590
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013107
7262717 - 7267371
4655