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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_726708_726986_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
726708 - 726986
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TGCCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TGCCCCTTCACC
Flanking Amino Acid:
QHAMAIKSLCCADGLMGIYL
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.1
50
43.3
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
71.1
0.47
0.8
61.9
34.9
Minor 5ss
40.7
-1
3.1
56.4
47.8
Minor BPS
60.9
0.32
1.8
68.75
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261