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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_727217_728421_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
727217 - 728421
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTCCTCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTGCAG
U12 Branch Point Sequence:
TTCCTCCCAGCA
Flanking Amino Acid:
TFHRLANLSHIYFKKFQYCS
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
39.6
-0.6
1.7
46.5
47
Major PPT
74.8
0.56
0.8
70.8
28.7
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
43.4
-0.5
2
57.62
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261