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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_728937_729080_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
728937 - 729080
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CCTGCTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GAATTCTCAAAT
Flanking Amino Acid:
TFSRLNRLVELDLSCNRLDE
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.4
0.42
1
61.1
40.2
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
54.6
0.22
1.6
68.74
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261