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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_729153_729919_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
729153 - 729919
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCTCCTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAC
U12 Branch Point Sequence:
GCTGCATCCACG
Flanking Amino Acid:
VFQECRELTVLVLRRNRIRW
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
48.9
-0
1.2
59.8
36.5
Major PPT
73.1
0.52
0.9
71.7
32.7
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
40.5
-0.8
2.2
45.31
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261