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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_729992_730108_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
729992 - 730108
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GCCTTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
AGCCACAAAACC
Flanking Amino Acid:
LCAEMPKLSWLDLEGNRIRA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
79
0.65
0.8
72.9
32
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
41.7
-0.6
2
49.3
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261