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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_730184_731429_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
730184 - 731429
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
AGCGCTGTGACC
Flanking Amino Acid:
AFAGLRSLYFLYMLNNSLAK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
70.8
0.47
0.7
63.9
24.5
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
44.6
-0.4
2.1
51.79
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261