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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7330381_7330875_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7330381 - 7330875
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTCTTCCACA
Flanking Amino Acid:
SVTPDSESKTEQQTTDEVGT
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.4
0.77
0.7
79.7
25.8
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
55.6
0.17
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012655
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028327
7330284 - 7356371
26088
ENSAPLT00000013190
7330266 - 7356371
26106