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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_733039_733427_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
733039 - 733427
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCTGTTCA
Flanking Amino Acid:
VPWVSPNVTRLDLKTNKIRS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.9
0.81
0.8
84.9
29.9
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
44.2
-0.4
3.7
76.33
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261