About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7330909_7335298_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7330909 - 7335298
Intron Length:
4390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
CTTCTTTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTCTTTACAC
Flanking Amino Acid:
QQTTDEVGTGASKRSTSTAN
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
69.7
40
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.9
0.67
0.8
75.9
31.6
Minor 5ss
44.5
-0.6
3.2
62.8
43.8
Minor BPS
56.7
0.19
1.7
65.5
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012655
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028327
7330284 - 7356371
26088
ENSAPLT00000013190
7330266 - 7356371
26106