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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_733534_733620_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
733534 - 733620
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TGCTTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAC
U12 Branch Point Sequence:
GTCCCCCCAGCA
Flanking Amino Acid:
TVVEDEAAPCSLELFPARCR
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.4
44.5
Major BPS
47.5
-0.1
1
52.4
34.3
Major PPT
71.9
0.49
0.9
65.5
36.1
Minor 5ss
45.3
-0.5
3.1
69.9
40.4
Minor BPS
43.4
-0.5
2
55.2
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261