Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7335401_7337867_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7335401 - 7337867

Intron Length:

2467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCACTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTTCAACAAAA

Flanking Amino Acid:

SAALLNASDRSTTKRSASLN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

0.74

0.8

35.7

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

48.5

-0.1

2.1

71.94

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012655

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028327

7330284 - 7356371

26088

ENSAPLT00000013190

7330266 - 7356371

26106