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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_733711_734120_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
733711 - 734120
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATTGGC
5'SS Class:
major
3'SS Sequence:
TCCCTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CATGCCCTAACA
Flanking Amino Acid:
CDNGADEENCVDNSGWLWVL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
63.7
41.1
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
71.1
0.47
0.8
64.8
30.8
Minor 5ss
33.6
-1.9
3.2
44.5
43.5
Minor BPS
59.1
0.28
1.8
69.25
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016348
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017070
724755 - 738015
13261