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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7341921_7342281_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7341921 - 7342281
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
CATATCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTACAT
Flanking Amino Acid:
SDASSPDSTQKSEVEKPSPG
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72
0.5
0.8
69.7
36.2
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
51
0.11
2
75.05
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012655
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028327
7330284 - 7356371
26088
ENSAPLT00000013190
7330266 - 7356371
26106