About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7342413_7342984_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7342413 - 7342984
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TATTCTTTACTT
Flanking Amino Acid:
VKRPPSPSTVRQKTRPPSPS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
74
0.6
1
65.6
41.1
Major PPT
78.2
0.64
0.9
74.7
34.7
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
70.8
0.73
1.5
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012655
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028327
7330284 - 7356371
26088