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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7350699_7351423_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7350699 - 7351423
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCGAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ACTTCCCGAATT
Flanking Amino Acid:
NMQERLERKKLQNEGKSASE
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
43.4
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
69.9
0.45
1
66.6
38.5
Minor 5ss
44.5
-0.6
3.2
65.1
46.1
Minor BPS
57.8
0.32
1.8
76.19
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012655
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028327
7330284 - 7356371
26088