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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7359117_7359695_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7359117 - 7359695
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATTCTGAATT
Flanking Amino Acid:
FAKTCAKCKNPITSGGLTYQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.4
0.68
0.7
73.6
31.4
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
66.7
0.6
1.4
78.4
37.6

Associated Gene:

Gene:
FHL1
Ensembl Gene ID:
ENSAPLG00000031131
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043879
7358017 - 7387790
29774
ENSAPLT00000036703
7357696 - 7367636
9941
ENSAPLT00000035577
7357957 - 7393988
36032
ENSAPLT00000017799
7358017 - 7385782
27766