About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7360545_7360967_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7360545 - 7360967
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
CTGTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TATTGCTCACTT
Flanking Amino Acid:
CKKPIGADSKELHFKNRYWH
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.4
0.71
0.9
76.3
37.7
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
48.7
-0
2.2
73.19
44

Associated Gene:

Gene:
FHL1
Ensembl Gene ID:
ENSAPLG00000031131
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036703
7357696 - 7367636
9941
ENSAPLT00000035577
7357957 - 7393988
36032
ENSAPLT00000017799
7358017 - 7385782
27766
ENSAPLT00000043879
7358017 - 7387790
29774