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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7361150_7367614_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7361150 - 7367614
Intron Length:
6465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTAACTTTACCC
Flanking Amino Acid:
MAFHRHTGPGSYTVGTM
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
55.3
0.14
1.7
63.5
42.2

Associated Gene:

Gene:
FHL1
Ensembl Gene ID:
ENSAPLG00000031131
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036703
7357696 - 7367636
9941